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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8808 and 8809 are separated by 761 nucleotides
8809 and 8810 are separated by 279 nucleotides
8810 and 8811 are separated by 225 nucleotides
8811 and 8812 are separated by 335 nucleotides
mRNA_440: 8808 - HMMPfam-G protein-coupled glucose receptor regulating Gpa2-PF11710,SUPERFAMILY--SSF81321, at 1,020,213 to 1,022,062
8808
mRNA_441: 8809 - K13989 DERL2_3 Derlin-2/3, at 1,022,824 to 1,024,299
8809
mRNA_442: 8810 - K11835 USP4_11_15, UBP12 ubiquitin carboxyl-terminal hydrolase 4/11/15, at 1,024,579 to 1,029,147
8810
mRNA_443: 8811 - KOG2742 Predicted oxidoreductase, at 1,029,373 to 1,030,485
8811
mRNA_444: 8812 - HMMPfam-Transcription factor IIIC subunit delta N-term-PF12657,HMMPfam-Putative zinc-finger of transcription factor IIIC complex-PF12660,SUPERFAMILY--SSF50978, at 1,030,821 to 1,034,414
8812
Group
Condition
mRNA
_440
mRNA
_441
mRNA
_442
mRNA
_443
mRNA
_444
8808
8809
8810
8811
8812
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.8
-1.0
+0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.7
+0.0
-0.1
-0.3
growth on oleic acid
YNB Glucose
+0.0
-0.8
+0.0
+0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.4
-0.0
-0.5
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.9
-0.7
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.4
-0.0
+0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.4
-0.1
+0.3
-0.2
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
+0.5
-0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.0
+0.0
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.6
-0.3
+0.2
+0.0
growth on ricinoleic acid
YNB Glucose
+0.2
-0.8
+0.2
+1.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-1.2
+0.3
+1.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.3
-0.0
+0.7
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-1.0
+0.2
+1.5
+0.6
auxotrophy
Dropout Complete
+0.7
-0.6
+0.2
+1.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.7
-0.4
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.5
-0.0
+0.5
+0.3
auxotrophy
YNB Glucose
+0.6
-0.7
+0.3
+1.1
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-1.0
+0.3
+1.5
+0.5
growth on ypd
YPD
+0.0
+1.9
+0.2
-0.2
+0.5
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