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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8809 and 8810 are separated by 279 nucleotides
8810 and 8811 are separated by 225 nucleotides
8811 and 8812 are separated by 335 nucleotides
8812 and 8813 are separated by 279 nucleotides
mRNA_441: 8809 - K13989 DERL2_3 Derlin-2/3, at 1,022,824 to 1,024,299
8809
mRNA_442: 8810 - K11835 USP4_11_15, UBP12 ubiquitin carboxyl-terminal hydrolase 4/11/15, at 1,024,579 to 1,029,147
8810
mRNA_443: 8811 - KOG2742 Predicted oxidoreductase, at 1,029,373 to 1,030,485
8811
mRNA_444: 8812 - HMMPfam-Transcription factor IIIC subunit delta N-term-PF12657,HMMPfam-Putative zinc-finger of transcription factor IIIC complex-PF12660,SUPERFAMILY--SSF50978, at 1,030,821 to 1,034,414
8812
mRNA_445: 8813 - K03768 PPIB, ppiB peptidyl-prolyl cis-trans isomerase B (cyclophilin B), at 1,034,694 to 1,036,039
8813
Group
Condition
mRNA
_441
mRNA
_442
mRNA
_443
mRNA
_444
mRNA
_445
8809
8810
8811
8812
8813
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-1.0
+0.1
+0.4
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.7
+0.0
-0.1
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.0
-0.5
-0.1
-0.4
growth on oleic acid
YNB Glucose
-0.8
+0.0
+0.3
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
-0.8
+0.2
+1.0
+0.3
-0.6
auxotrophy
Dropout Complete
-0.6
+0.2
+1.0
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.0
+0.4
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.9
-0.7
+0.4
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
+0.1
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.2
+0.3
+1.4
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
+0.6
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.1
+0.3
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
-0.3
+0.2
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.0
+0.7
+0.7
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.5
-0.3
+0.0
+0.6
auxotrophy
YNB Glucose
-0.7
+0.3
+1.1
+0.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-1.0
+0.3
+1.5
+0.5
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
+0.2
+1.5
+0.6
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.4
+0.2
+0.4
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.0
+0.5
+0.3
+0.5
growth on ypd
YPD
+1.9
+0.2
-0.2
+0.5
+0.6
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