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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8810 and 8811 are separated by 225 nucleotides
8811 and 8812 are separated by 335 nucleotides
8812 and 8813 are separated by 279 nucleotides
8813 and 8814 are separated by 856 nucleotides
mRNA_442: 8810 - K11835 USP4_11_15, UBP12 ubiquitin carboxyl-terminal hydrolase 4/11/15, at 1,024,579 to 1,029,147
8810
mRNA_443: 8811 - KOG2742 Predicted oxidoreductase, at 1,029,373 to 1,030,485
8811
mRNA_444: 8812 - HMMPfam-Transcription factor IIIC subunit delta N-term-PF12657,HMMPfam-Putative zinc-finger of transcription factor IIIC complex-PF12660,SUPERFAMILY--SSF50978, at 1,030,821 to 1,034,414
8812
mRNA_445: 8813 - K03768 PPIB, ppiB peptidyl-prolyl cis-trans isomerase B (cyclophilin B), at 1,034,694 to 1,036,039
8813
mRNA_446: 8814 - K00254 DHODH, pyrD dihydroorotate dehydrogenase, at 1,036,896 to 1,038,649
8814
Group
Condition
mRNA
_442
mRNA
_443
mRNA
_444
mRNA
_445
mRNA
_446
8810
8811
8812
8813
8814
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.5
-0.1
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.4
-0.3
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
+0.1
+0.4
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
+0.0
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.3
-0.2
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.3
-0.2
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.4
-0.1
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.6
-0.3
+0.3
N.D.
auxotrophy
Dropout Complete
+0.2
+1.0
-0.1
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.3
+0.0
+0.6
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+1.0
+0.3
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.2
+0.4
+0.9
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.7
+0.7
-0.4
N.D.
growth on ypd
YPD
+0.2
-0.2
+0.5
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.5
+0.3
+0.5
N.D.
auxotrophy
YNB Glucose
+0.3
+1.1
+0.5
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+1.4
+0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+1.5
+0.5
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+1.5
+0.6
+0.1
N.D.
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