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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8814 and 8815 are separated by 1322 nucleotides
8815 and 8816 are separated by 618 nucleotides
8816 and 8817 are separated by 278 nucleotides
8817 and 8818 are separated by 616 nucleotides
mRNA_446: 8814 - K00254 DHODH, pyrD dihydroorotate dehydrogenase, at 1,036,896 to 1,038,649
8814
mRNA_447: 8815 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 1,039,972 to 1,042,565
8815
mRNA_448: 8816 - K20221 IPO4, RANBP4 importin-4, at 1,043,184 to 1,046,908
8816
mRNA_449: 8817 - HMMPfam-ESSS subunit of NADH-ubiquinone oxidoreductase (complex I)-PF10183, at 1,047,187 to 1,047,536
8817
mRNA_450: 8818 - K09525 DNAJC5 DnaJ homolog subfamily C member 5, at 1,048,153 to 1,050,379
8818
Group
Condition
mRNA
_446
mRNA
_447
mRNA
_448
mRNA
_449
mRNA
_450
8814
8815
8816
8817
8818
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.1
N.D.
-1.8
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
N.D.
-0.5
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
N.D.
-0.5
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.7
N.D.
-0.5
-0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
N.D.
+0.1
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.5
N.D.
-0.6
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
N.D.
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
N.D.
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.1
N.D.
-0.7
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
N.D.
+0.4
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
N.D.
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
N.D.
-0.2
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
N.D.
+0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
N.D.
+0.2
-0.1
auxotrophy
Dropout Complete
N.D.
+0.4
N.D.
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose
N.D.
+0.5
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
N.D.
+0.6
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
N.D.
-0.3
+0.5
growth on ypd
YPD
N.D.
+0.0
N.D.
+1.5
+0.1
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