Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
8815 and 8816 are separated by 618 nucleotides
8816 and 8817 are separated by 278 nucleotides
8817 and 8818 are separated by 616 nucleotides
8818 and 8819 are separated by 567 nucleotides
mRNA_447: 8815 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 1,039,972 to 1,042,565
8815
mRNA_448: 8816 - K20221 IPO4, RANBP4 importin-4, at 1,043,184 to 1,046,908
8816
mRNA_449: 8817 - HMMPfam-ESSS subunit of NADH-ubiquinone oxidoreductase (complex I)-PF10183, at 1,047,187 to 1,047,536
8817
mRNA_450: 8818 - K09525 DNAJC5 DnaJ homolog subfamily C member 5, at 1,048,153 to 1,050,379
8818
mRNA_451: 8819 - K00830 AGXT alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase, at 1,050,947 to 1,052,587
8819
Group
Condition
mRNA
_447
mRNA
_448
mRNA
_449
mRNA
_450
mRNA
_451
8815
8816
8817
8818
8819
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
N.D.
-1.8
+0.6
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
-0.5
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.1
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
-0.5
-0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
N.D.
-0.5
-0.6
+0.3
growth on oleic acid
YNB Oleic Acid
+0.5
N.D.
-0.6
-0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
-0.3
+0.5
-0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
-0.3
+0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
+0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.2
+0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-0.1
+0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.1
N.D.
-0.7
-0.5
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.4
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
+0.1
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.2
-0.1
+0.4
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.2
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.6
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
-0.0
-0.2
+0.6
auxotrophy
Dropout Complete
+0.4
N.D.
+0.1
-0.2
+0.4
auxotrophy
YNB Glucose
+0.5
N.D.
+0.0
-0.1
+0.7
growth on ypd
YPD
+0.0
N.D.
+1.5
+0.1
-0.3
remove
mRNA_447
plot
remove
mRNA_448
plot
remove
mRNA_449
remove
mRNA_450
plot
remove
mRNA_451
plot