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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8816 and 8817 are separated by 278 nucleotides
8817 and 8818 are separated by 616 nucleotides
8818 and 8819 are separated by 567 nucleotides
8819 and 8820 are separated by 603 nucleotides
mRNA_448: 8816 - K20221 IPO4, RANBP4 importin-4, at 1,043,184 to 1,046,908
8816
mRNA_449: 8817 - HMMPfam-ESSS subunit of NADH-ubiquinone oxidoreductase (complex I)-PF10183, at 1,047,187 to 1,047,536
8817
mRNA_450: 8818 - K09525 DNAJC5 DnaJ homolog subfamily C member 5, at 1,048,153 to 1,050,379
8818
mRNA_451: 8819 - K00830 AGXT alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase, at 1,050,947 to 1,052,587
8819
mRNA_452: 8820 - SUPERFAMILY--SSF52047, at 1,053,191 to 1,054,789
8820
Group
Condition
mRNA
_448
mRNA
_449
mRNA
_450
mRNA
_451
mRNA
_452
8816
8817
8818
8819
8820
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
-0.6
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.5
-0.3
-0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
+0.5
-0.6
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.7
-0.5
+0.3
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.8
+0.6
+0.6
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.5
+0.2
-0.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.3
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.6
-0.2
+0.2
+0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
+0.1
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.1
+0.4
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.1
+0.2
-0.3
auxotrophy
Dropout Complete
N.D.
+0.1
-0.2
+0.4
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.4
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.2
+0.4
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.2
+0.6
+0.3
auxotrophy
YNB Glucose
N.D.
+0.0
-0.1
+0.7
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.1
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
-0.1
+0.2
+0.4
growth on ypd
YPD
N.D.
+1.5
+0.1
-0.3
+0.1
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