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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8817 and 8818 are separated by 616 nucleotides
8818 and 8819 are separated by 567 nucleotides
8819 and 8820 are separated by 603 nucleotides
8820 and 8821 are separated by 432 nucleotides
mRNA_449: 8817 - HMMPfam-ESSS subunit of NADH-ubiquinone oxidoreductase (complex I)-PF10183, at 1,047,187 to 1,047,536
8817
mRNA_450: 8818 - K09525 DNAJC5 DnaJ homolog subfamily C member 5, at 1,048,153 to 1,050,379
8818
mRNA_451: 8819 - K00830 AGXT alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase, at 1,050,947 to 1,052,587
8819
mRNA_452: 8820 - SUPERFAMILY--SSF52047, at 1,053,191 to 1,054,789
8820
mRNA_453: 8821 - SUPERFAMILY--SSF52047, at 1,055,222 to 1,056,818
8821
Group
Condition
mRNA
_449
mRNA
_450
mRNA
_451
mRNA
_452
mRNA
_453
8817
8818
8819
8820
8821
ypd buoyancy
40 hrs No Buoyancy Separation
-1.8
+0.6
+0.6
+0.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.5
-0.6
-0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.6
+0.3
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.2
-0.0
+0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.3
-0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.5
+0.3
+0.4
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.4
+0.1
+0.2
-0.6
growth on oleic acid
YNB Oleic Acid
-0.6
-0.2
+0.2
+0.6
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.2
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
-0.0
-0.2
+0.6
+0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
+0.4
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.2
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
+0.4
-0.3
+0.2
auxotrophy
Dropout Complete
+0.1
-0.2
+0.4
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
+0.4
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.1
+0.1
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.2
-0.1
+0.3
+0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
+0.2
+0.4
-0.0
auxotrophy
YNB Glucose
+0.0
-0.1
+0.7
+0.1
+0.2
growth on ypd
YPD
+1.5
+0.1
-0.3
+0.1
+1.1
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