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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8819 and 8820 are separated by 603 nucleotides
8820 and 8821 are separated by 432 nucleotides
8821 and 8822 are separated by 373 nucleotides
8822 and 8823 are separated by 511 nucleotides
mRNA_451: 8819 - K00830 AGXT alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase, at 1,050,947 to 1,052,587
8819
mRNA_452: 8820 - SUPERFAMILY--SSF52047, at 1,053,191 to 1,054,789
8820
mRNA_453: 8821 - SUPERFAMILY--SSF52047, at 1,055,222 to 1,056,818
8821
mRNA_454: 8822 - Hypothetical Protein, at 1,057,192 to 1,059,678
8822
mRNA_455: 8823 - KOG1745 Histones H3 and H4, at 1,060,190 to 1,060,901
8823
Group
Condition
mRNA
_451
mRNA
_452
mRNA
_453
mRNA
_454
mRNA
_455
8819
8820
8821
8822
8823
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.2
-0.2
-0.3
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.3
-0.3
-0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.1
-0.0
-0.2
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.3
-0.4
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.0
-0.4
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.6
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
+0.2
-0.0
-0.7
growth on ricinoleic acid
YNB Glucose
+0.6
+0.3
-0.4
-0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
-0.1
+0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.4
+0.0
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
+0.0
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.3
+0.2
+0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.6
-0.1
-0.0
+0.1
growth on ypd
YPD
-0.3
+0.1
+1.1
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.1
+0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.1
+0.3
+0.2
+0.1
auxotrophy
Dropout Complete
+0.4
-0.0
+0.1
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.4
-0.0
+0.2
+0.2
growth on oleic acid
YNB Glucose
+0.3
+0.3
+0.0
+0.1
+0.3
auxotrophy
YNB Glucose
+0.7
+0.1
+0.2
+0.2
+0.5
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