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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8822 and 8823 are separated by 511 nucleotides
8823 and 8824 are separated by 1329 nucleotides
8824 and 8825 are separated by 461 nucleotides
8825 and 8826 are separated by 309 nucleotides
mRNA_454: 8822 - Hypothetical Protein, at 1,057,192 to 1,059,678
8822
mRNA_455: 8823 - KOG1745 Histones H3 and H4, at 1,060,190 to 1,060,901
8823
mRNA_456: 8824 - Hypothetical Protein, at 1,062,231 to 1,064,186
8824
mRNA_457: 8825 - K14963 WDR5, SWD3, CPS30 COMPASS component SWD3, at 1,064,648 to 1,065,964
8825
mRNA_458: 8826 - KOG2676 Uncharacterized conserved protein, at 1,066,274 to 1,068,450
8826
Group
Condition
mRNA
_454
mRNA
_455
mRNA
_456
mRNA
_457
mRNA
_458
8822
8823
8824
8825
8826
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.7
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.5
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.7
+0.3
N.D.
N.D.
growth on ypd
YPD
+0.1
-0.1
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.4
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.0
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
-0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
+0.6
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
+0.4
N.D.
N.D.
auxotrophy
Dropout Complete
+0.3
+0.1
+0.4
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.3
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose
+0.2
+0.5
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.2
+0.3
N.D.
N.D.
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