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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8833 and 8834 are separated by 332 nucleotides
8834 and 8835 are separated by 326 nucleotides
8835 and 8836 are separated by 81 nucleotides
8836 and 8837 are separated by 846 nucleotides
mRNA_465: 8833 - K10858 PMS2 DNA mismatch repair protein PMS2, at 1,079,162 to 1,083,033
8833
mRNA_466: 8834 - Hypothetical Protein, at 1,083,366 to 1,084,523
8834
mRNA_467: 8835 - K07748 E1.1.1.170, NSDHL, ERG26 sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating), at 1,084,850 to 1,086,342
8835
mRNA_468: 8836 - Hypothetical Protein, at 1,086,424 to 1,087,519
8836
mRNA_469: 8837 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 1,088,366 to 1,093,699
8837
Group
Condition
mRNA
_465
mRNA
_466
mRNA
_467
mRNA
_468
mRNA
_469
8833
8834
8835
8836
8837
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
N.D.
+0.2
-1.5
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.2
N.D.
+0.3
-1.1
auxotrophy
YNB Glucose
-0.2
-0.0
N.D.
+0.1
-1.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
N.D.
+0.0
-1.5
auxotrophy
Dropout Complete
-0.2
-0.0
N.D.
+0.2
-1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.1
N.D.
+0.5
-1.6
growth on ricinoleic acid
YNB Glucose
-0.3
+0.0
N.D.
+0.3
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
N.D.
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
N.D.
-0.2
-0.7
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
N.D.
+0.5
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
N.D.
-0.3
-0.3
growth on ypd
YPD
+0.0
+0.0
N.D.
+0.3
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
N.D.
-0.5
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.1
N.D.
+0.4
-0.5
growth on oleic acid
YNB Glucose
-0.1
-0.2
N.D.
+0.4
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.5
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.3
N.D.
-0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
N.D.
+0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.6
N.D.
+0.3
+0.9
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