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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8838 and 8839 are separated by 331 nucleotides
8839 and 8840 are separated by 48 nucleotides
8840 and 8841 are separated by 237 nucleotides
8841 and 8842 are separated by 714 nucleotides
mRNA_470: 8838 - KOG0714 Molecular chaperone (DnaJ superfamily), at 1,094,157 to 1,095,851
8838
mRNA_471: 8839 - Hypothetical Protein, at 1,096,183 to 1,097,842
8839
mRNA_472: 8840 - KOG0987 DNA helicase PIF1/RRM3, at 1,097,891 to 1,099,308
8840
mRNA_473: 8841 - K15255 PIF1 ATP-dependent DNA helicase PIF1, at 1,099,546 to 1,101,190
8841
mRNA_474: 8842 - Hypothetical Protein, at 1,101,905 to 1,103,305
8842
Group
Condition
mRNA
_470
mRNA
_471
mRNA
_472
mRNA
_473
mRNA
_474
8838
8839
8840
8841
8842
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.0
N.D.
-0.6
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.0
N.D.
-0.4
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.1
N.D.
-0.2
-0.3
auxotrophy
Dropout Complete
-0.1
-0.2
N.D.
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.2
N.D.
+0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.6
N.D.
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.3
N.D.
-0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.1
N.D.
-0.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.2
N.D.
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
N.D.
+0.0
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
N.D.
+0.2
+0.1
growth on ypd
YPD
-0.0
+0.1
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose
+0.1
+0.2
N.D.
-0.2
+0.2
growth on oleic acid
YNB Glucose
-0.0
+0.2
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
N.D.
+0.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
N.D.
+0.2
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.7
N.D.
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.2
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.3
N.D.
+0.5
+0.5
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