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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8845 and 8846 are separated by 575 nucleotides
8846 and 8847 are separated by 644 nucleotides
8847 and 8848 are separated by 527 nucleotides
8848 and 8849 are separated by 249 nucleotides
mRNA_477: 8845 - K10256 FAD2 omega-6 fatty acid desaturase / acyl-lipid omega-6 desaturase (Delta-12 desaturase), at 1,108,768 to 1,110,470
8845
mRNA_478: 8846 - HMMPfam-Tetratricopeptide repeat-PF07719,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1,111,046 to 1,113,487
8846
mRNA_479: 8847 - K17302 COPB2, SEC27 coatomer subunit beta', at 1,114,132 to 1,117,214
8847
mRNA_480: 8848 - ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SUPERFAMILY--SSF46689, at 1,117,742 to 1,121,401
8848
mRNA_481: 8849 - K11756 RSC1_2 chromatin structure-remodeling complex subunit RSC1/2, at 1,121,651 to 1,124,733
8849
Group
Condition
mRNA
_477
mRNA
_478
mRNA
_479
mRNA
_480
mRNA
_481
8845
8846
8847
8848
8849
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
N.D.
-0.4
-0.7
growth on ypd
YPD
N.D.
-0.2
N.D.
+0.1
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
N.D.
+0.4
-1.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
N.D.
-0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
N.D.
-0.3
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
N.D.
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
N.D.
-0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
N.D.
-0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
N.D.
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
N.D.
+0.5
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
N.D.
+0.0
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
N.D.
-0.2
-0.1
auxotrophy
Dropout Complete
N.D.
+0.0
N.D.
+0.5
-0.6
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
N.D.
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
N.D.
+0.4
-0.3
auxotrophy
YNB Glucose
N.D.
+0.0
N.D.
+0.6
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
N.D.
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
N.D.
+0.5
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.4
N.D.
+0.3
+0.3
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