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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8846 and 8847 are separated by 644 nucleotides
8847 and 8848 are separated by 527 nucleotides
8848 and 8849 are separated by 249 nucleotides
8849 and 8850 are separated by 21985 nucleotides
mRNA_478: 8846 - HMMPfam-Tetratricopeptide repeat-PF07719,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1,111,046 to 1,113,487
8846
mRNA_479: 8847 - K17302 COPB2, SEC27 coatomer subunit beta', at 1,114,132 to 1,117,214
8847
mRNA_480: 8848 - ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SUPERFAMILY--SSF46689, at 1,117,742 to 1,121,401
8848
mRNA_481: 8849 - K11756 RSC1_2 chromatin structure-remodeling complex subunit RSC1/2, at 1,121,651 to 1,124,733
8849
mRNA_482: 8850 - Hypothetical Protein, at 1,146,719 to 1,146,997
8850
Group
Condition
mRNA
_478
mRNA
_479
mRNA
_480
mRNA
_481
mRNA
_482
8846
8847
8848
8849
8850
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.4
-0.7
-0.2
growth on ypd
YPD
-0.2
N.D.
+0.1
-1.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
+0.4
-1.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.2
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.2
-0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.0
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
-0.3
-0.6
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.2
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.4
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
+0.5
-0.7
+0.2
auxotrophy
Dropout Complete
+0.0
N.D.
+0.5
-0.6
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
+0.0
-0.5
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.2
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.4
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
-0.1
-0.3
+0.2
auxotrophy
YNB Glucose
+0.0
N.D.
+0.6
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
+0.5
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.2
+0.1
+0.5
growth on oleic acid
YNB Glucose
+0.4
N.D.
+0.3
+0.3
+0.5
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