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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8849 and 8850 are separated by 21985 nucleotides
8850 and 8851 are separated by 3106 nucleotides
8851 and 8852 are separated by 638 nucleotides
8852 and 8853 are separated by 412 nucleotides
mRNA_481: 8849 - K11756 RSC1_2 chromatin structure-remodeling complex subunit RSC1/2, at 1,121,651 to 1,124,733
8849
mRNA_482: 8850 - Hypothetical Protein, at 1,146,719 to 1,146,997
8850
mRNA_483: 8851 - KOG1339 Aspartyl protease, at 1,150,104 to 1,151,338
8851
mRNA_484: 8852 - Hypothetical Protein, at 1,151,977 to 1,154,074
8852
mRNA_485: 8853 - K13278 ASPG 60kDa lysophospholipase, at 1,154,487 to 1,156,857
8853
Group
Condition
mRNA
_481
mRNA
_482
mRNA
_483
mRNA
_484
mRNA
_485
8849
8850
8851
8852
8853
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
-0.2
-0.1
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.0
-0.8
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.2
-0.4
-0.1
-0.0
growth on ypd
YPD
-1.3
+0.1
-0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.2
-0.2
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.3
-0.2
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
+0.1
-0.1
-0.3
auxotrophy
Dropout Complete
-0.6
+0.0
+0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
-0.3
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
-0.2
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.7
+0.2
+0.0
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
+0.1
-0.1
+0.0
auxotrophy
YNB Glucose
-0.4
+0.1
+0.2
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.2
+0.2
+0.0
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.0
+0.3
+0.0
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+0.8
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
+0.7
-0.1
+0.2
growth on oleic acid
YNB Glucose
+0.3
+0.5
-0.1
-0.2
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
+0.5
+0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.3
+1.0
-0.0
+0.2
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