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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8852 and 8853 are separated by 412 nucleotides
8853 and 8854 are separated by 190 nucleotides
8854 and 8855 are separated by 283 nucleotides
8855 and 8856 are separated by 216 nucleotides
mRNA_484: 8852 - Hypothetical Protein, at 1,151,977 to 1,154,074
8852
mRNA_485: 8853 - K13278 ASPG 60kDa lysophospholipase, at 1,154,487 to 1,156,857
8853
mRNA_486: 8854 - HMMPfam-Domain of unknown function (DUF202)-PF02656, at 1,157,048 to 1,157,778
8854
mRNA_487: 8855 - HMMPfam-Thioredoxin-PF00085,HMMPfam-PITH domain-PF06201,PRINTS-Thioredoxin family signature-PR00421,ProSitePatterns-Thioredoxin family active site.-PS00194,ProSiteProfiles-Thioredoxin domain profile.-PS51352,ProSiteProfiles-PITH domain profile.-PS51532,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF52833, at 1,158,062 to 1,159,223
8855
mRNA_488: 8856 - Hypothetical Protein, at 1,159,440 to 1,160,357
8856
Group
Condition
mRNA
_484
mRNA
_485
mRNA
_486
mRNA
_487
mRNA
_488
8852
8853
8854
8855
8856
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
-1.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
-1.3
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.1
-0.9
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
-1.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
-0.8
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.4
-1.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
-0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
-0.4
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.3
-0.3
N.D.
N.D.
growth on ypd
YPD
+0.2
+0.1
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.4
-0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
+1.3
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
+0.1
+0.7
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
-0.2
+1.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.2
+0.7
N.D.
N.D.
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