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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8868 and 8869 are separated by 158 nucleotides
8869 and 8870 are separated by 410 nucleotides
8870 and 8871 are separated by 264 nucleotides
8871 and 8872 are separated by 797 nucleotides
mRNA_500: 8868 - KOG2543 Origin recognition complex, subunit 5, at 1,188,933 to 1,191,266
8868
mRNA_501: 8869 - K11338 RUVBL2, RVB2, INO80J RuvB-like protein 2, at 1,191,425 to 1,193,408
8869
mRNA_502: 8870 - ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089, at 1,193,819 to 1,194,942
8870
mRNA_503: 8871 - Hypothetical Protein, at 1,195,207 to 1,198,729
8871
mRNA_504: 8872 - Hypothetical Protein, at 1,199,527 to 1,200,402
8872
Group
Condition
mRNA
_500
mRNA
_501
mRNA
_502
mRNA
_503
mRNA
_504
8868
8869
8870
8871
8872
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.7
-0.1
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.1
-1.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.0
-1.0
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.8
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.1
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.1
-0.6
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.3
-0.1
-0.3
auxotrophy
Dropout Complete
N.D.
N.D.
-0.0
-0.6
+0.0
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.0
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
+0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.4
+0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.0
-0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
+0.1
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.1
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
+0.0
+0.3
growth on ypd
YPD
N.D.
N.D.
+0.5
+0.1
-0.1
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