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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8871 and 8872 are separated by 797 nucleotides
8872 and 8873 are separated by 349 nucleotides
8873 and 8874 are separated by 1427 nucleotides
8874 and 8875 are separated by 794 nucleotides
mRNA_503: 8871 - Hypothetical Protein, at 1,195,207 to 1,198,729
8871
mRNA_504: 8872 - Hypothetical Protein, at 1,199,527 to 1,200,402
8872
mRNA_505: 8873 - HMMPfam-ubiE/COQ5 methyltransferase family-PF01209,SUPERFAMILY--SSF53335, at 1,200,752 to 1,201,768
8873
mRNA_506: 8874 - K08793 STK32, YANK serine/threonine kinase 32, at 1,203,196 to 1,205,360
8874
mRNA_507: 8875 - K19347 SUN1_2 SUN domain-containing protein 1/2, at 1,206,155 to 1,210,007
8875
Group
Condition
mRNA
_503
mRNA
_504
mRNA
_505
mRNA
_506
mRNA
_507
8871
8872
8873
8874
8875
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.4
-0.6
-0.9
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.4
-0.6
-1.7
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
-0.3
-1.1
-1.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.8
-0.1
-0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
-0.3
-0.7
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
+0.0
+0.2
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
-0.2
+0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
-0.0
+0.3
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.2
-0.6
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.6
-0.0
-0.3
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.4
-0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Glucose
-0.8
-0.1
+0.1
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.3
-0.5
-0.0
-0.3
growth on ypd
YPD
+0.1
-0.1
-0.0
-0.3
-0.2
auxotrophy
Dropout Complete
-0.6
+0.0
-0.1
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.0
-0.2
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.4
+0.1
+0.5
+0.2
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.0
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
+0.7
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
-0.1
+0.7
-0.0
auxotrophy
YNB Glucose
-0.5
+0.1
+0.0
+0.1
+1.0
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