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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8873 and 8874 are separated by 1427 nucleotides
8874 and 8875 are separated by 794 nucleotides
8875 and 8876 are separated by 347 nucleotides
8876 and 8877 are separated by 196 nucleotides
mRNA_505: 8873 - HMMPfam-ubiE/COQ5 methyltransferase family-PF01209,SUPERFAMILY--SSF53335, at 1,200,752 to 1,201,768
8873
mRNA_506: 8874 - K08793 STK32, YANK serine/threonine kinase 32, at 1,203,196 to 1,205,360
8874
mRNA_507: 8875 - K19347 SUN1_2 SUN domain-containing protein 1/2, at 1,206,155 to 1,210,007
8875
mRNA_508: 8876 - K16466 CETN3, CDC31 centrin-3, at 1,210,355 to 1,211,163
8876
mRNA_509: 8877 - K11566 ASK1 DASH complex subunit ASK1, at 1,211,360 to 1,213,561
8877
Group
Condition
mRNA
_505
mRNA
_506
mRNA
_507
mRNA
_508
mRNA
_509
8873
8874
8875
8876
8877
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-1.7
-0.4
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.9
-1.0
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-1.1
-1.4
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.7
-0.3
N.D.
-0.5
growth on ypd
YPD
-0.0
-0.3
-0.2
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
-0.3
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.0
-0.3
N.D.
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
-0.4
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.5
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.5
+0.4
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.0
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.6
+0.3
N.D.
+0.5
growth on oleic acid
YNB Glucose
+0.5
+0.2
-0.5
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.0
+0.3
N.D.
+0.3
auxotrophy
Dropout Complete
-0.1
+0.1
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
+0.3
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
+0.2
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
+0.1
N.D.
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.7
-0.0
N.D.
-0.0
auxotrophy
YNB Glucose
+0.0
+0.1
+1.0
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.7
-0.3
-0.0
N.D.
+0.8
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