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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8875 and 8876 are separated by 347 nucleotides
8876 and 8877 are separated by 196 nucleotides
8877 and 8878 are separated by 927 nucleotides
8878 and 8879 are separated by 176 nucleotides
mRNA_507: 8875 - K19347 SUN1_2 SUN domain-containing protein 1/2, at 1,206,155 to 1,210,007
8875
mRNA_508: 8876 - K16466 CETN3, CDC31 centrin-3, at 1,210,355 to 1,211,163
8876
mRNA_509: 8877 - K11566 ASK1 DASH complex subunit ASK1, at 1,211,360 to 1,213,561
8877
mRNA_510: 8878 - K01922 PPCS, coaB phosphopantothenate-cysteine ligase, at 1,214,489 to 1,216,016
8878
mRNA_511: 8879 - KOG1426 FOG RCC1 domain, at 1,216,193 to 1,218,102
8879
Group
Condition
mRNA
_507
mRNA
_508
mRNA
_509
mRNA
_510
mRNA
_511
8875
8876
8877
8878
8879
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
N.D.
+0.4
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.5
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
-0.3
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
N.D.
-0.3
N.D.
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
-0.2
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.5
N.D.
-0.5
growth on ypd
YPD
-0.2
N.D.
-0.3
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
-0.3
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
-0.3
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.5
N.D.
+0.0
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
-0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.8
N.D.
-0.4
auxotrophy
Dropout Complete
+0.2
N.D.
+0.2
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
+0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+0.5
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
+0.3
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
+0.3
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
+0.8
N.D.
+0.2
auxotrophy
YNB Glucose
+1.0
N.D.
-0.1
N.D.
+0.3
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