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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8880 and 8881 are separated by 2062 nucleotides
8881 and 8882 are separated by 938 nucleotides
8882 and 8883 are separated by 279 nucleotides
8883 and 8884 are separated by 216 nucleotides
mRNA_512: 8880 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF13410,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 1,218,210 to 1,219,403
8880
mRNA_513: 8881 - K09468 MSN2_4 zinc finger protein MSN2/4, at 1,221,466 to 1,223,534
8881
mRNA_514: 8882 - KOG0417 Ubiquitin-protein ligase, at 1,224,473 to 1,225,235
8882
mRNA_515: 8883 - Hypothetical Protein, at 1,225,515 to 1,227,526
8883
mRNA_516: 8884 - K04482 RAD51 DNA repair protein RAD51, at 1,227,743 to 1,229,231
8884
Group
Condition
mRNA
_512
mRNA
_513
mRNA
_514
mRNA
_515
mRNA
_516
8880
8881
8882
8883
8884
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.2
-3.4
+0.1
-0.8
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.9
-0.4
-1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-1.3
-0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.5
-0.6
-0.7
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
-1.9
-0.3
+0.3
growth on ypd
YPD
-0.0
+0.2
-1.1
-0.7
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.0
+0.1
-0.9
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
-0.7
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.0
-1.1
+0.0
+0.1
auxotrophy
Dropout Complete
+0.4
+0.5
-1.0
-0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
-1.0
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.6
-0.3
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.0
+0.7
-0.5
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.4
-0.6
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
-0.5
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.3
+0.5
-0.0
-0.4
+0.4
auxotrophy
YNB Glucose
+0.2
+0.4
-0.3
+0.3
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.7
+0.6
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.3
-0.3
+0.4
+1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.5
-0.1
+0.6
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.4
+0.1
+0.2
+0.9
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