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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8881 and 8882 are separated by 938 nucleotides
8882 and 8883 are separated by 279 nucleotides
8883 and 8884 are separated by 216 nucleotides
8884 and 8885 are separated by 269 nucleotides
mRNA_513: 8881 - K09468 MSN2_4 zinc finger protein MSN2/4, at 1,221,466 to 1,223,534
8881
mRNA_514: 8882 - KOG0417 Ubiquitin-protein ligase, at 1,224,473 to 1,225,235
8882
mRNA_515: 8883 - Hypothetical Protein, at 1,225,515 to 1,227,526
8883
mRNA_516: 8884 - K04482 RAD51 DNA repair protein RAD51, at 1,227,743 to 1,229,231
8884
mRNA_517: 8885 - K07508 ACAA2 acetyl-CoA acyltransferase 2, at 1,229,501 to 1,231,364
8885
Group
Condition
mRNA
_513
mRNA
_514
mRNA
_515
mRNA
_516
mRNA
_517
8881
8882
8883
8884
8885
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-3.4
+0.1
-0.8
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-1.3
-0.2
-0.4
-1.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.9
-0.4
-1.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-1.9
-0.3
+0.3
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.7
-0.4
+0.1
-1.0
auxotrophy
Dropout Complete
+0.5
-1.0
-0.3
-0.5
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.6
-0.7
+0.1
+0.2
growth on ypd
YPD
+0.2
-1.1
-0.7
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.6
-0.1
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-1.1
+0.0
+0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.1
-0.9
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-1.0
+0.0
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.7
-0.5
-0.5
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.6
-0.3
+0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.5
-0.1
-0.1
+0.1
auxotrophy
YNB Glucose
+0.4
-0.3
+0.3
-0.0
-0.4
growth on oleic acid
YNB Glucose
+0.5
-0.0
-0.4
+0.4
-0.4
growth on oleic acid
YNB Oleic Acid
+0.7
+0.6
-0.3
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.1
+0.6
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.1
+0.2
+0.9
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.3
+0.4
+1.0
+0.4
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