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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8883 and 8884 are separated by 216 nucleotides
8884 and 8885 are separated by 269 nucleotides
8885 and 8886 are separated by 328 nucleotides
8886 and 8887 are separated by 1103 nucleotides
mRNA_515: 8883 - Hypothetical Protein, at 1,225,515 to 1,227,526
8883
mRNA_516: 8884 - K04482 RAD51 DNA repair protein RAD51, at 1,227,743 to 1,229,231
8884
mRNA_517: 8885 - K07508 ACAA2 acetyl-CoA acyltransferase 2, at 1,229,501 to 1,231,364
8885
mRNA_518: 8886 - HMMPfam-Major Facilitator Superfamily-PF07690,SUPERFAMILY--SSF103473, at 1,231,693 to 1,233,306
8886
mRNA_519: 8887 - KOG0767 Mitochondrial phosphate carrier protein, at 1,234,410 to 1,235,210
8887
Group
Condition
mRNA
_515
mRNA
_516
mRNA
_517
mRNA
_518
mRNA
_519
8883
8884
8885
8886
8887
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.8
-0.8
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
-1.0
-0.2
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.4
-1.2
+0.3
N.D.
auxotrophy
Dropout Complete
-0.3
-0.5
-0.6
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
+0.1
-0.1
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.5
-0.3
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.1
-1.0
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
-0.3
-0.4
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
-0.6
+0.2
N.D.
growth on ypd
YPD
-0.7
+0.3
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.1
+0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
-0.5
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
+0.0
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
+0.1
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.4
+0.4
-0.4
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
+0.5
-0.3
+0.3
N.D.
auxotrophy
YNB Glucose
+0.3
-0.0
-0.4
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.9
-0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.5
-0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+1.0
+0.4
-0.1
N.D.
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