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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8887 and 8888 are separated by 97 nucleotides
8888 and 8889 are separated by 162 nucleotides
8889 and 8890 are separated by 136 nucleotides
8890 and 8891 are separated by 197 nucleotides
mRNA_519: 8887 - KOG0767 Mitochondrial phosphate carrier protein, at 1,234,410 to 1,235,210
8887
mRNA_520: 8888 - Hypothetical Protein, at 1,235,308 to 1,236,592
8888
mRNA_521: 8889 - K15102 SLC25A3, PHC, PIC solute carrier family 25 (mitochondrial phosphate transporter), member 3, at 1,236,755 to 1,238,717
8889
mRNA_522: 8890 - K13026 DHX57 ATP-dependent RNA helicase DHX57, at 1,238,854 to 1,244,185
8890
mRNA_523: 8891 - K11644 SIN3A paired amphipathic helix protein Sin3a, at 1,244,383 to 1,249,643
8891
Group
Condition
mRNA
_519
mRNA
_520
mRNA
_521
mRNA
_522
mRNA
_523
8887
8888
8889
8890
8891
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
N.D.
-0.1
-2.7
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.6
N.D.
-0.2
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
N.D.
+0.2
-0.8
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.4
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.5
N.D.
+0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
N.D.
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.8
N.D.
+0.1
+1.0
growth on oleic acid
YNB Glucose
N.D.
-0.2
N.D.
+0.0
+0.5
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
N.D.
+0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
N.D.
+0.0
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
N.D.
+0.2
-0.1
auxotrophy
Dropout Complete
N.D.
+0.1
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
N.D.
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
N.D.
+0.4
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
N.D.
-0.0
+0.9
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
N.D.
-0.0
+1.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
N.D.
+0.1
+1.5
auxotrophy
YNB Glucose
N.D.
-0.1
N.D.
+0.4
+1.2
growth on ypd
YPD
N.D.
-0.3
N.D.
+0.1
+1.6
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