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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8890 and 8891 are separated by 197 nucleotides
8891 and 8892 are separated by 283 nucleotides
8892 and 8893 are separated by 411 nucleotides
8893 and 8894 are separated by 312 nucleotides
mRNA_522: 8890 - K13026 DHX57 ATP-dependent RNA helicase DHX57, at 1,238,854 to 1,244,185
8890
mRNA_523: 8891 - K11644 SIN3A paired amphipathic helix protein Sin3a, at 1,244,383 to 1,249,643
8891
mRNA_524: 8892 - KOG0519 Sensory transduction histidine kinase, at 1,249,927 to 1,253,514
8892
mRNA_525: 8893 - K01265 map methionyl aminopeptidase, at 1,253,926 to 1,255,834
8893
mRNA_526: 8894 - K02915 RP-L34e, RPL34 large subunit ribosomal protein L34e, at 1,256,147 to 1,256,994
8894
Group
Condition
mRNA
_522
mRNA
_523
mRNA
_524
mRNA
_525
mRNA
_526
8890
8891
8892
8893
8894
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-2.7
-0.0
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.8
+0.1
-0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
-0.1
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
-0.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
+0.0
-0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.3
-0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.7
-0.1
-0.7
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.5
+0.2
+0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.5
-0.1
-0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.9
-0.6
-0.1
N.D.
auxotrophy
Dropout Complete
+0.1
+0.2
-0.2
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.5
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.1
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.8
+0.1
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+1.0
-0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+1.3
-0.0
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+1.5
+0.2
-0.3
N.D.
auxotrophy
YNB Glucose
+0.4
+1.2
-0.2
+0.3
N.D.
growth on ypd
YPD
+0.1
+1.6
+0.4
-0.3
N.D.
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