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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8891 and 8892 are separated by 283 nucleotides
8892 and 8893 are separated by 411 nucleotides
8893 and 8894 are separated by 312 nucleotides
8894 and 8895 are separated by 1044 nucleotides
mRNA_523: 8891 - K11644 SIN3A paired amphipathic helix protein Sin3a, at 1,244,383 to 1,249,643
8891
mRNA_524: 8892 - KOG0519 Sensory transduction histidine kinase, at 1,249,927 to 1,253,514
8892
mRNA_525: 8893 - K01265 map methionyl aminopeptidase, at 1,253,926 to 1,255,834
8893
mRNA_526: 8894 - K02915 RP-L34e, RPL34 large subunit ribosomal protein L34e, at 1,256,147 to 1,256,994
8894
mRNA_527: 8895 - Hypothetical Protein, at 1,258,039 to 1,258,831
8895
Group
Condition
mRNA
_523
mRNA
_524
mRNA
_525
mRNA
_526
mRNA
_527
8891
8892
8893
8894
8895
ypd buoyancy
40 hrs No Buoyancy Separation
-2.7
-0.0
+0.3
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
+0.1
-0.7
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
-0.6
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.0
-0.5
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.1
-0.7
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.4
-0.1
N.D.
-0.1
auxotrophy
Dropout Complete
+0.2
-0.2
+0.1
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.4
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
-0.6
-0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
-0.3
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.2
+0.4
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
+0.5
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
+0.1
-0.6
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.5
-0.1
-0.1
N.D.
+0.3
auxotrophy
YNB Glucose
+1.2
-0.2
+0.3
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Arginine
+1.0
-0.1
-0.1
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+1.3
-0.0
+0.2
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
+1.5
+0.2
-0.3
N.D.
+0.4
growth on ypd
YPD
+1.6
+0.4
-0.3
N.D.
+0.3
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