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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8892 and 8893 are separated by 411 nucleotides
8893 and 8894 are separated by 312 nucleotides
8894 and 8895 are separated by 1044 nucleotides
8895 and 8896 are separated by 510 nucleotides
mRNA_524: 8892 - KOG0519 Sensory transduction histidine kinase, at 1,249,927 to 1,253,514
8892
mRNA_525: 8893 - K01265 map methionyl aminopeptidase, at 1,253,926 to 1,255,834
8893
mRNA_526: 8894 - K02915 RP-L34e, RPL34 large subunit ribosomal protein L34e, at 1,256,147 to 1,256,994
8894
mRNA_527: 8895 - Hypothetical Protein, at 1,258,039 to 1,258,831
8895
mRNA_528: 8896 - BLAST hydroxymethylglutaryl-mitochondrial isoform 1 [Lichth..., at 1,259,342 to 1,261,066
8896
Group
Condition
mRNA
_524
mRNA
_525
mRNA
_526
mRNA
_527
mRNA
_528
8892
8893
8894
8895
8896
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.1
N.D.
-0.2
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
N.D.
-0.1
-1.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.7
N.D.
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.6
N.D.
+0.1
-0.8
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
N.D.
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.7
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose
-0.2
+0.3
N.D.
-0.6
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.5
N.D.
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
N.D.
-0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.6
N.D.
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
N.D.
-0.0
-0.3
auxotrophy
Dropout Complete
-0.2
+0.1
N.D.
-0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.4
N.D.
+0.4
+0.2
growth on oleic acid
YNB Glucose
-0.1
-0.1
N.D.
+0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.3
N.D.
+0.1
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.3
N.D.
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.5
N.D.
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
N.D.
+0.4
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.4
N.D.
+0.1
+0.0
growth on ypd
YPD
+0.4
-0.3
N.D.
+0.3
+1.3
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