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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8896 and 8897 are separated by 1576 nucleotides
8897 and 8898 are separated by 606 nucleotides
8898 and 8899 are separated by 133 nucleotides
8899 and 8900 are separated by 370 nucleotides
mRNA_528: 8896 - BLAST hydroxymethylglutaryl-mitochondrial isoform 1 [Lichth..., at 1,259,342 to 1,261,066
8896
mRNA_529: 8897 - Hypothetical Protein, at 1,262,643 to 1,263,431
8897
mRNA_530: 8898 - Hypothetical Protein, at 1,264,038 to 1,264,727
8898
mRNA_531: 8899 - KOG1812 Predicted E3 ubiquitin ligase, at 1,264,861 to 1,266,270
8899
mRNA_532: 8900 - K05355 hexPS, COQ1 hexaprenyl-diphosphate synthase, at 1,266,641 to 1,268,317
8900
Group
Condition
mRNA
_528
mRNA
_529
mRNA
_530
mRNA
_531
mRNA
_532
8896
8897
8898
8899
8900
facs on lipid accumulation
Sorted High BODIPY Gate
-1.8
-0.5
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-1.4
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.1
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.6
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
-0.1
N.D.
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.8
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.3
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose
-0.4
-0.1
N.D.
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
-0.5
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.8
N.D.
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
N.D.
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.2
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.3
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.3
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.0
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.3
N.D.
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
N.D.
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
N.D.
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
N.D.
N.D.
N.D.
auxotrophy
Dropout Complete
-0.0
+0.3
N.D.
N.D.
N.D.
growth on ypd
YPD
+1.3
+0.9
N.D.
N.D.
N.D.
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