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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8898 and 8899 are separated by 133 nucleotides
8899 and 8900 are separated by 370 nucleotides
8900 and 8901 are separated by 273 nucleotides
8901 and 8902 are separated by 435 nucleotides
mRNA_530: 8898 - Hypothetical Protein, at 1,264,038 to 1,264,727
8898
mRNA_531: 8899 - KOG1812 Predicted E3 ubiquitin ligase, at 1,264,861 to 1,266,270
8899
mRNA_532: 8900 - K05355 hexPS, COQ1 hexaprenyl-diphosphate synthase, at 1,266,641 to 1,268,317
8900
mRNA_533: 8901 - K17759 AIBP, nnrE NAD(P)H-hydrate epimerase, at 1,268,591 to 1,269,786
8901
mRNA_534: 8902 - K08054 CANX calnexin, at 1,270,222 to 1,272,470
8902
Group
Condition
mRNA
_530
mRNA
_531
mRNA
_532
mRNA
_533
mRNA
_534
8898
8899
8900
8901
8902
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
-0.1
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.0
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
+0.2
-0.1
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
+0.3
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.2
-0.0
growth on ypd
YPD
N.D.
N.D.
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
+0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
+0.0
+0.5
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
+0.4
+0.2
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