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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8902 and 8903 are separated by 230 nucleotides
8903 and 8904 are separated by 205 nucleotides
8904 and 8905 are separated by 401 nucleotides
8905 and 8906 are separated by 816 nucleotides
mRNA_534: 8902 - K08054 CANX calnexin, at 1,270,222 to 1,272,470
8902
mRNA_535: 8903 - HMMPfam-Ribosomal protein S21-PF01165,TIGRFAM-S21p ribosomal protein S21-TIGR00030, at 1,272,701 to 1,273,396
8903
mRNA_536: 8904 - K09548 PFDN1 prefoldin subunit 1, at 1,273,602 to 1,274,230
8904
mRNA_537: 8905 - KOG0725 Reductases with broad range of substrate specificities, at 1,274,632 to 1,275,903
8905
mRNA_538: 8906 - Hypothetical Protein, at 1,276,720 to 1,277,120
8906
Group
Condition
mRNA
_534
mRNA
_535
mRNA
_536
mRNA
_537
mRNA
_538
8902
8903
8904
8905
8906
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-1.8
-0.6
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
-1.1
-0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
-1.1
-0.1
+0.2
auxotrophy
Dropout Complete
-0.1
N.D.
-1.0
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-1.1
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
-0.8
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.2
+0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
+0.3
+0.1
-0.5
growth on oleic acid
YNB Glucose
-0.0
N.D.
-0.2
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.5
+0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
-0.1
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
+0.1
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.4
+0.0
+0.6
auxotrophy
YNB Glucose
+0.2
N.D.
-0.6
+0.1
+0.4
growth on ypd
YPD
+0.1
N.D.
-0.5
+0.4
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
-0.3
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
-0.1
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.4
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
-0.1
+0.1
+1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.3
+0.7
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
N.D.
+0.7
+0.2
-0.1
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