Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 8904 and 8905 are separated by 401 nucleotides8905 and 8906 are separated by 816 nucleotides8906 and 8907 are separated by 508 nucleotides8907 and 8908 are separated by 513 nucleotides mRNA_536: 8904 - K09548 PFDN1 prefoldin subunit 1, at 1,273,602 to 1,274,230 8904 mRNA_537: 8905 - KOG0725 Reductases with broad range of substrate specificities, at 1,274,632 to 1,275,903 8905 mRNA_538: 8906 - Hypothetical Protein, at 1,276,720 to 1,277,120 8906 mRNA_539: 8907 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 1,277,629 to 1,279,340 8907 mRNA_540: 8908 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1,279,854 to 1,286,363 8908
Group Condition mRNA_536 mRNA_537 mRNA_538 mRNA_539 mRNA_540
8904 8905 8906 8907 8908
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 +0.1 -0.5 -2.3 -1.4
auxotrophy Dropout Complete -1.0 -0.1 +0.0 -1.9 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.7 +0.2 -0.1 -1.6 -1.8
growth on ricinoleic acid YNB Glucose +0.1 +0.0 -0.1 -2.1 -0.6
facs on lipid accumulation Sorted Low BODIPY Gate -1.8 -0.6 +0.7 -0.8 +0.2
facs on lipid accumulation Sorted High BODIPY Gate -1.1 -0.0 +0.3 -1.0 -0.3
growth on oleic acid YNB Glucose -0.2 -0.2 +0.4 -2.0 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.4 +0.0 +0.6 -1.9 -0.3
auxotrophy YNB Glucose 75mM Methionine -0.2 +0.0 +0.0 -1.6 -0.0
auxotrophy YNB Glucose -0.6 +0.1 +0.4 -1.5 -0.2
growth on oleic acid YNB Oleic Acid -0.3 +0.2 +0.1 -1.5 -0.3
growth on ypd YPD -0.5 +0.4 +0.1 -0.8 -0.4
facs on lipid accumulation Sorted No BODIPY Gate -1.1 -0.1 +0.2 -0.1 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.8 +0.1 +0.4 -0.4 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.5 +0.3 +0.4 -0.4 -0.2
ypd buoyancy 40 hrs No Buoyancy Separation -1.1 +0.0 +0.3 +0.9 -0.5
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.2 +0.1 -0.5 +0.0
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.2 +0.2 -0.4 -0.1
ypd buoyancy 40 hrs Median Buoyancy +0.4 -0.2 +0.4 -0.2 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 +0.7 +0.1 +0.0 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.1 +1.0 -0.2 +0.2
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