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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8904 and 8905 are separated by 401 nucleotides
8905 and 8906 are separated by 816 nucleotides
8906 and 8907 are separated by 508 nucleotides
8907 and 8908 are separated by 513 nucleotides
mRNA_536: 8904 - K09548 PFDN1 prefoldin subunit 1, at 1,273,602 to 1,274,230
8904
mRNA_537: 8905 - KOG0725 Reductases with broad range of substrate specificities, at 1,274,632 to 1,275,903
8905
mRNA_538: 8906 - Hypothetical Protein, at 1,276,720 to 1,277,120
8906
mRNA_539: 8907 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 1,277,629 to 1,279,340
8907
mRNA_540: 8908 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1,279,854 to 1,286,363
8908
Group
Condition
mRNA
_536
mRNA
_537
mRNA
_538
mRNA
_539
mRNA
_540
8904
8905
8906
8907
8908
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.1
-0.5
-2.3
-1.4
auxotrophy
Dropout Complete
-1.0
-0.1
+0.0
-1.9
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.2
-0.1
-1.6
-1.8
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
-0.1
-2.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.8
-0.6
+0.7
-0.8
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
-0.0
+0.3
-1.0
-0.3
growth on oleic acid
YNB Glucose
-0.2
-0.2
+0.4
-2.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.0
+0.6
-1.9
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
+0.0
-1.6
-0.0
auxotrophy
YNB Glucose
-0.6
+0.1
+0.4
-1.5
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
+0.1
-1.5
-0.3
growth on ypd
YPD
-0.5
+0.4
+0.1
-0.8
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-1.1
-0.1
+0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
+0.1
+0.4
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.3
+0.4
-0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.0
+0.3
+0.9
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.1
-0.5
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.2
-0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.2
+0.4
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.7
+0.1
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
+1.0
-0.2
+0.2
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