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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8905 and 8906 are separated by 816 nucleotides
8906 and 8907 are separated by 508 nucleotides
8907 and 8908 are separated by 513 nucleotides
8908 and 8909 are separated by 429 nucleotides
mRNA_537: 8905 - KOG0725 Reductases with broad range of substrate specificities, at 1,274,632 to 1,275,903
8905
mRNA_538: 8906 - Hypothetical Protein, at 1,276,720 to 1,277,120
8906
mRNA_539: 8907 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 1,277,629 to 1,279,340
8907
mRNA_540: 8908 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1,279,854 to 1,286,363
8908
mRNA_541: 8909 - HMMPfam-NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)-PF05821, at 1,286,793 to 1,287,579
8909
Group
Condition
mRNA
_537
mRNA
_538
mRNA
_539
mRNA
_540
mRNA
_541
8905
8906
8907
8908
8909
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.5
-2.3
-1.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
-1.6
-1.8
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
-2.1
-0.6
N.D.
auxotrophy
Dropout Complete
-0.1
+0.0
-1.9
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.4
-2.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.0
-1.6
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.6
-1.9
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-1.5
-0.3
N.D.
auxotrophy
YNB Glucose
+0.1
+0.4
-1.5
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.3
-1.0
-0.3
N.D.
growth on ypd
YPD
+0.4
+0.1
-0.8
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.7
-0.8
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.5
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.4
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.4
-0.4
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.4
-0.4
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
+0.1
+0.0
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.3
+0.9
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+1.0
-0.2
+0.2
N.D.
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