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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8906 and 8907 are separated by 508 nucleotides
8907 and 8908 are separated by 513 nucleotides
8908 and 8909 are separated by 429 nucleotides
8909 and 8910 are separated by 223 nucleotides
mRNA_538: 8906 - Hypothetical Protein, at 1,276,720 to 1,277,120
8906
mRNA_539: 8907 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 1,277,629 to 1,279,340
8907
mRNA_540: 8908 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1,279,854 to 1,286,363
8908
mRNA_541: 8909 - HMMPfam-NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)-PF05821, at 1,286,793 to 1,287,579
8909
mRNA_542: 8910 - KOG0118 FOG RRM domain, at 1,287,803 to 1,289,304
8910
Group
Condition
mRNA
_538
mRNA
_539
mRNA
_540
mRNA
_541
mRNA
_542
8906
8907
8908
8909
8910
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-2.3
-1.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-1.6
-1.8
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-2.1
-0.6
N.D.
N.D.
auxotrophy
Dropout Complete
+0.0
-1.9
-0.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-1.5
-0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.4
-2.0
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-1.6
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-1.9
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
+0.4
-1.5
-0.2
N.D.
N.D.
growth on ypd
YPD
+0.1
-0.8
-0.4
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-1.0
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.5
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.4
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.4
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.8
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.2
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.4
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.9
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
-0.2
+0.2
N.D.
N.D.
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