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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8913 and 8914 are separated by 229 nucleotides
8914 and 8915 are separated by 251 nucleotides
8915 and 8916 are separated by 575 nucleotides
8916 and 8917 are separated by 732 nucleotides
mRNA_545: 8913 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,295,068 to 1,298,428
8913
mRNA_546: 8914 - K00799 GST, gst glutathione S-transferase, at 1,298,658 to 1,299,726
8914
mRNA_547: 8915 - KOG2385 Uncharacterized conserved protein, at 1,299,978 to 1,303,835
8915
mRNA_548: 8916 - K15084 SLC25A16, GDA, LEU5 solute carrier family 25 (mitochondrial carrier protein), member 16, at 1,304,411 to 1,305,873
8916
mRNA_549: 8917 - K12618 XRN1, SEP1, KEM1 5'-3' exoribonuclease 1, at 1,306,606 to 1,311,810
8917
Group
Condition
mRNA
_545
mRNA
_546
mRNA
_547
mRNA
_548
mRNA
_549
8913
8914
8915
8916
8917
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.4
-1.9
N.D.
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
-1.8
N.D.
+0.0
auxotrophy
YNB Glucose
+0.1
-0.6
-0.2
N.D.
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.5
+0.2
N.D.
-1.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
-1.1
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.5
+0.6
N.D.
-0.4
auxotrophy
Dropout Complete
-0.3
-0.3
-0.4
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.1
+0.2
N.D.
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
-0.5
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
-0.6
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.6
+1.2
N.D.
-1.1
growth on oleic acid
YNB Glucose
-0.0
-0.4
+0.7
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
-0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.0
-0.5
+0.7
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.6
N.D.
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.6
-0.6
N.D.
+1.1
growth on ypd
YPD
-0.2
+0.8
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.6
+0.3
N.D.
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
+0.1
N.D.
+1.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.3
+0.6
N.D.
+1.0
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