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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8917 and 8918 are separated by 189 nucleotides
8918 and 8919 are separated by 811 nucleotides
8919 and 8920 are separated by 237 nucleotides
8920 and 8921 are separated by 200 nucleotides
mRNA_549: 8917 - K12618 XRN1, SEP1, KEM1 5'-3' exoribonuclease 1, at 1,306,606 to 1,311,810
8917
mRNA_550: 8918 - KOG4391 Predicted alpha/beta hydrolase BEM46, at 1,312,000 to 1,313,154
8918
mRNA_551: 8919 - KOG1515 Arylacetamide deacetylase, at 1,313,966 to 1,316,695
8919
mRNA_552: 8920 - KOG1761 Signal recognition particle, subunit Srp14, at 1,316,933 to 1,317,920
8920
mRNA_553: 8921 - KOG0907 Thioredoxin, at 1,318,121 to 1,318,450
8921
Group
Condition
mRNA
_549
mRNA
_550
mRNA
_551
mRNA
_552
mRNA
_553
8917
8918
8919
8920
8921
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.4
+0.2
-0.9
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.6
-0.3
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-1.0
-0.2
-0.2
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-1.1
-0.5
+0.1
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.4
+0.3
-1.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.2
+0.5
-1.8
N.D.
growth on oleic acid
YNB Glucose
-0.5
-0.4
+0.2
-0.3
N.D.
auxotrophy
Dropout Complete
+0.1
-0.3
-0.5
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
+0.1
+0.1
-0.0
N.D.
auxotrophy
YNB Glucose
-0.7
-0.1
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
-0.2
-0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.0
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.0
-0.3
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.2
+0.5
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.6
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
+0.1
+0.0
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
-0.0
+0.2
-0.3
N.D.
growth on ypd
YPD
+0.3
+0.2
-0.1
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.4
+0.2
+0.0
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
+0.2
-0.3
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+1.1
+0.5
-0.6
+0.5
N.D.
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