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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8918 and 8919 are separated by 811 nucleotides
8919 and 8920 are separated by 237 nucleotides
8920 and 8921 are separated by 200 nucleotides
8921 and 8922 are separated by 1009 nucleotides
mRNA_550: 8918 - KOG4391 Predicted alpha/beta hydrolase BEM46, at 1,312,000 to 1,313,154
8918
mRNA_551: 8919 - KOG1515 Arylacetamide deacetylase, at 1,313,966 to 1,316,695
8919
mRNA_552: 8920 - KOG1761 Signal recognition particle, subunit Srp14, at 1,316,933 to 1,317,920
8920
mRNA_553: 8921 - KOG0907 Thioredoxin, at 1,318,121 to 1,318,450
8921
mRNA_554: 8922 - K13337 PEX19 peroxin-19, at 1,319,460 to 1,321,018
8922
Group
Condition
mRNA
_550
mRNA
_551
mRNA
_552
mRNA
_553
mRNA
_554
8918
8919
8920
8921
8922
growth on oleic acid
YNB Oleic Acid
-0.6
-0.3
-0.5
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.5
-1.8
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.3
-1.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.2
-0.9
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
-0.5
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.5
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.4
+0.2
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
-0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.1
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
+0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.6
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.6
-0.3
N.D.
N.D.
growth on ypd
YPD
+0.2
-0.1
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.5
-0.1
N.D.
N.D.
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