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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8923 and 8924 are separated by 288 nucleotides
8924 and 8925 are separated by 728 nucleotides
8925 and 8926 are separated by 834 nucleotides
8926 and 8927 are separated by 645 nucleotides
mRNA_555: 8923 - K03115 CSNK2B casein kinase II subunit beta, at 1,321,464 to 1,322,533
8923
mRNA_556: 8924 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 1,322,822 to 1,323,921
8924
mRNA_557: 8925 - HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236, at 1,324,650 to 1,329,010
8925
mRNA_558: 8926 - HMMPfam-SH3 domain-PF00018,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 1,329,845 to 1,332,752
8926
mRNA_559: 8927 - KOG4672 Uncharacterized conserved low complexity protein, at 1,333,398 to 1,335,053
8927
Group
Condition
mRNA
_555
mRNA
_556
mRNA
_557
mRNA
_558
mRNA
_559
8923
8924
8925
8926
8927
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
+0.0
N.D.
-2.8
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.8
+0.3
N.D.
-1.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
+0.1
N.D.
-0.7
auxotrophy
YNB Glucose
N.D.
-0.2
+0.5
N.D.
-1.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.4
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
-0.0
N.D.
-0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
+0.3
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.4
+0.2
N.D.
+0.0
growth on ypd
YPD
N.D.
-0.3
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.3
N.D.
-0.2
auxotrophy
Dropout Complete
N.D.
-0.1
+0.2
N.D.
+0.0
growth on oleic acid
YNB Glucose
N.D.
-0.4
+0.2
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
+0.5
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
+1.0
N.D.
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.5
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
+0.6
N.D.
+0.5
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.4
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.9
+0.5
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
+1.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+1.2
+1.0
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.7
+0.8
N.D.
+1.0
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