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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8926 and 8927 are separated by 645 nucleotides
8927 and 8928 are separated by 1430 nucleotides
8928 and 8929 are separated by 355 nucleotides
8929 and 8930 are separated by 539 nucleotides
mRNA_558: 8926 - HMMPfam-SH3 domain-PF00018,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 1,329,845 to 1,332,752
8926
mRNA_559: 8927 - KOG4672 Uncharacterized conserved low complexity protein, at 1,333,398 to 1,335,053
8927
mRNA_560: 8928 - Hypothetical Protein, at 1,336,484 to 1,340,949
8928
mRNA_561: 8929 - Hypothetical Protein, at 1,341,305 to 1,346,099
8929
mRNA_562: 8930 - HMMPfam-HPC2 and ubinuclein domain-PF08729, at 1,346,639 to 1,349,486
8930
Group
Condition
mRNA
_558
mRNA
_559
mRNA
_560
mRNA
_561
mRNA
_562
8926
8927
8928
8929
8930
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-2.8
+0.1
+0.1
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.7
-0.1
+0.0
-1.2
growth on oleic acid
YNB Glucose
N.D.
+0.4
-0.2
-0.0
-2.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.4
-0.0
-0.4
+0.4
auxotrophy
Dropout Complete
N.D.
+0.0
-0.2
-0.1
-1.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.0
-0.3
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
-0.0
+0.2
-0.7
growth on ypd
YPD
N.D.
+0.1
+0.2
+0.1
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
+0.3
-0.1
-0.9
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.1
-0.0
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
+0.0
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.7
+0.3
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.5
+0.0
+0.1
-1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.1
-0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.1
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.2
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.1
+0.0
+0.1
auxotrophy
YNB Glucose
N.D.
-1.2
-0.1
-0.1
+1.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.9
+0.1
+0.0
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+1.0
-0.1
-0.3
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.0
+0.2
+1.9
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