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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8929 and 8930 are separated by 539 nucleotides
8930 and 8931 are separated by 198 nucleotides
8931 and 8932 are separated by 88 nucleotides
8932 and 8933 are separated by 110 nucleotides
mRNA_561: 8929 - Hypothetical Protein, at 1,341,305 to 1,346,099
8929
mRNA_562: 8930 - HMMPfam-HPC2 and ubinuclein domain-PF08729, at 1,346,639 to 1,349,486
8930
mRNA_563: 8931 - K05287 PIGF phosphatidylinositol glycan, class F, at 1,349,685 to 1,350,957
8931
mRNA_564: 8932 - K01230 MAN1 mannosyl-oligosaccharide alpha-1,2-mannosidase, at 1,351,046 to 1,353,534
8932
mRNA_565: 8933 - K03256 TRM6, GCD10 tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit, at 1,353,645 to 1,355,726
8933
Group
Condition
mRNA
_561
mRNA
_562
mRNA
_563
mRNA
_564
mRNA
_565
8929
8930
8931
8932
8933
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.9
-1.6
-0.4
N.D.
growth on oleic acid
YNB Glucose
-0.0
-2.0
-0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.7
-1.4
-0.6
N.D.
auxotrophy
Dropout Complete
-0.1
-1.0
-1.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.6
-0.1
-0.8
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
-1.1
-0.3
-0.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
-0.7
-0.5
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.5
-0.2
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
-1.0
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.0
-0.4
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.3
+0.1
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.0
-0.7
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.1
+0.0
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-1.2
+0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
+0.0
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.3
-0.1
-0.1
N.D.
growth on ypd
YPD
+0.1
-1.1
+0.8
-0.1
N.D.
auxotrophy
YNB Glucose
-0.1
+1.3
-1.1
-0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.4
+0.3
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+1.9
-0.2
-0.6
N.D.
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