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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8930 and 8931 are separated by 198 nucleotides
8931 and 8932 are separated by 88 nucleotides
8932 and 8933 are separated by 110 nucleotides
8933 and 8934 are separated by 117 nucleotides
mRNA_562: 8930 - HMMPfam-HPC2 and ubinuclein domain-PF08729, at 1,346,639 to 1,349,486
8930
mRNA_563: 8931 - K05287 PIGF phosphatidylinositol glycan, class F, at 1,349,685 to 1,350,957
8931
mRNA_564: 8932 - K01230 MAN1 mannosyl-oligosaccharide alpha-1,2-mannosidase, at 1,351,046 to 1,353,534
8932
mRNA_565: 8933 - K03256 TRM6, GCD10 tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit, at 1,353,645 to 1,355,726
8933
mRNA_566: 8934 - HMMPfam-Oligosaccaryltransferase-PF10215,SUPERFAMILY--SSF103464, at 1,355,844 to 1,356,185
8934
Group
Condition
mRNA
_562
mRNA
_563
mRNA
_564
mRNA
_565
mRNA
_566
8930
8931
8932
8933
8934
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-1.6
-0.4
N.D.
+0.1
growth on oleic acid
YNB Glucose
-2.0
-0.4
-0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-1.4
-0.6
N.D.
+0.4
auxotrophy
Dropout Complete
-1.0
-1.2
-0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.1
-0.8
N.D.
-0.7
growth on oleic acid
YNB Oleic Acid
-1.1
-0.3
-0.4
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.7
-0.5
-0.4
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-1.0
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.2
-0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.7
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
-0.1
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-1.2
+0.1
+0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.1
-0.6
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
-0.4
+0.4
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
+0.0
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.0
-0.2
N.D.
-0.2
growth on ypd
YPD
-1.1
+0.8
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose
+1.3
-1.1
-0.3
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.3
+0.3
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.9
-0.2
-0.6
N.D.
-0.2
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