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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8931 and 8932 are separated by 88 nucleotides
8932 and 8933 are separated by 110 nucleotides
8933 and 8934 are separated by 117 nucleotides
8934 and 8935 are separated by 270 nucleotides
mRNA_563: 8931 - K05287 PIGF phosphatidylinositol glycan, class F, at 1,349,685 to 1,350,957
8931
mRNA_564: 8932 - K01230 MAN1 mannosyl-oligosaccharide alpha-1,2-mannosidase, at 1,351,046 to 1,353,534
8932
mRNA_565: 8933 - K03256 TRM6, GCD10 tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit, at 1,353,645 to 1,355,726
8933
mRNA_566: 8934 - HMMPfam-Oligosaccaryltransferase-PF10215,SUPERFAMILY--SSF103464, at 1,355,844 to 1,356,185
8934
mRNA_567: 8935 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 1,356,456 to 1,359,397
8935
Group
Condition
mRNA
_563
mRNA
_564
mRNA
_565
mRNA
_566
mRNA
_567
8931
8932
8933
8934
8935
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.6
-0.4
N.D.
+0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.4
-0.6
N.D.
+0.4
-0.2
auxotrophy
Dropout Complete
-1.2
-0.3
N.D.
+0.1
-0.3
auxotrophy
YNB Glucose
-1.1
-0.3
N.D.
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.8
N.D.
-0.7
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-1.0
-0.2
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.5
-0.4
N.D.
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.2
N.D.
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.4
N.D.
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.6
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
N.D.
-0.5
+0.2
growth on oleic acid
YNB Glucose
-0.4
-0.2
N.D.
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.6
N.D.
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.3
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.2
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.3
N.D.
-1.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.4
N.D.
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
N.D.
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.4
N.D.
+0.3
+0.0
growth on ypd
YPD
+0.8
-0.1
N.D.
-0.1
+0.4
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