Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
8933 and 8934 are separated by 117 nucleotides
8934 and 8935 are separated by 270 nucleotides
8935 and 8936 are separated by 229 nucleotides
8936 and 8937 are separated by 707 nucleotides
mRNA_565: 8933 - K03256 TRM6, GCD10 tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit, at 1,353,645 to 1,355,726
8933
mRNA_566: 8934 - HMMPfam-Oligosaccaryltransferase-PF10215,SUPERFAMILY--SSF103464, at 1,355,844 to 1,356,185
8934
mRNA_567: 8935 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 1,356,456 to 1,359,397
8935
mRNA_568: 8936 - K14454 GOT1 aspartate aminotransferase, cytoplasmic, at 1,359,627 to 1,361,515
8936
mRNA_569: 8937 - K07059 K07059 uncharacterized protein, at 1,362,223 to 1,362,868
8937
Group
Condition
mRNA
_565
mRNA
_566
mRNA
_567
mRNA
_568
mRNA
_569
8933
8934
8935
8936
8937
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.3
-1.3
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.1
+0.3
+0.2
-0.5
growth on ypd
YPD
N.D.
-0.1
+0.4
-0.3
-0.9
auxotrophy
YNB Glucose
N.D.
-0.3
-0.1
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.7
-0.0
+0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.5
+0.2
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.1
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
-0.2
-0.9
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.3
-0.3
+0.1
auxotrophy
Dropout Complete
N.D.
+0.1
-0.3
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.0
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.0
-0.4
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
+0.0
-0.1
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.1
-0.3
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.1
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
+0.0
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
-0.3
+0.5
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.0
-0.3
+0.8
remove
mRNA_565
plot
remove
mRNA_566
plot
remove
mRNA_567
remove
mRNA_568
plot
remove
mRNA_569
plot