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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8934 and 8935 are separated by 270 nucleotides
8935 and 8936 are separated by 229 nucleotides
8936 and 8937 are separated by 707 nucleotides
8937 and 8938 are separated by 905 nucleotides
mRNA_566: 8934 - HMMPfam-Oligosaccaryltransferase-PF10215,SUPERFAMILY--SSF103464, at 1,355,844 to 1,356,185
8934
mRNA_567: 8935 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 1,356,456 to 1,359,397
8935
mRNA_568: 8936 - K14454 GOT1 aspartate aminotransferase, cytoplasmic, at 1,359,627 to 1,361,515
8936
mRNA_569: 8937 - K07059 K07059 uncharacterized protein, at 1,362,223 to 1,362,868
8937
mRNA_570: 8938 - Hypothetical Protein, at 1,363,774 to 1,366,185
8938
Group
Condition
mRNA
_566
mRNA
_567
mRNA
_568
mRNA
_569
mRNA
_570
8934
8935
8936
8937
8938
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.3
+0.2
-0.5
-0.1
growth on ypd
YPD
-0.1
+0.4
-0.3
-0.9
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.3
-1.3
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.0
+0.0
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.2
-0.3
-0.1
-0.0
auxotrophy
YNB Glucose
-0.3
-0.1
-0.4
-0.2
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.1
-0.2
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.0
-0.2
+0.1
+0.0
auxotrophy
Dropout Complete
+0.1
-0.3
+0.1
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.0
-0.4
+0.5
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
-0.3
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-0.3
+0.6
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
-0.3
-0.3
+0.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.0
-0.1
-0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.2
-0.9
+0.3
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.1
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.0
+0.0
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.1
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.3
+0.5
+0.1
growth on oleic acid
YNB Glucose
+0.0
+0.0
-0.3
+0.8
-0.0
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