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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8936 and 8937 are separated by 707 nucleotides
8937 and 8938 are separated by 905 nucleotides
8938 and 8939 are separated by 582 nucleotides
8939 and 8940 are separated by 312 nucleotides
mRNA_568: 8936 - K14454 GOT1 aspartate aminotransferase, cytoplasmic, at 1,359,627 to 1,361,515
8936
mRNA_569: 8937 - K07059 K07059 uncharacterized protein, at 1,362,223 to 1,362,868
8937
mRNA_570: 8938 - Hypothetical Protein, at 1,363,774 to 1,366,185
8938
mRNA_571: 8939 - Hypothetical Protein, at 1,366,768 to 1,367,604
8939
mRNA_572: 8940 - Hypothetical Protein, at 1,367,917 to 1,369,757
8940
Group
Condition
mRNA
_568
mRNA
_569
mRNA
_570
mRNA
_571
mRNA
_572
8936
8937
8938
8939
8940
growth on ypd
YPD
-0.3
-0.9
-0.0
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.3
+0.3
+0.4
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
+0.3
+0.5
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.5
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.4
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
+0.0
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.3
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
-0.0
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.4
+0.1
N.D.
+0.3
auxotrophy
YNB Glucose
-0.4
-0.2
+0.3
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.4
+0.5
-0.0
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.5
+0.1
N.D.
-0.2
auxotrophy
Dropout Complete
+0.1
-0.2
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.6
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
+0.1
N.D.
+0.5
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
+0.4
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
+0.3
N.D.
-0.0
growth on oleic acid
YNB Glucose
-0.3
+0.8
-0.0
N.D.
+0.2
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