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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8944 and 8945 are separated by 176 nucleotides
8945 and 8946 are separated by 328 nucleotides
8946 and 8947 are separated by 238 nucleotides
8947 and 8948 are separated by 201 nucleotides
mRNA_576: 8944 - K20182 VPS33 vacuolar protein sorting-associated protein 33, at 1,379,753 to 1,382,507
8944
mRNA_577: 8945 - Hypothetical Protein, at 1,382,684 to 1,384,433
8945
mRNA_578: 8946 - K05687 PARK7 protein DJ-1, at 1,384,762 to 1,386,533
8946
mRNA_579: 8947 - K10686 UBE1C, UBA3 ubiquitin-activating enzyme E1 C, at 1,386,772 to 1,388,532
8947
mRNA_580: 8948 - Hypothetical Protein, at 1,388,734 to 1,389,540
8948
Group
Condition
mRNA
_576
mRNA
_577
mRNA
_578
mRNA
_579
mRNA
_580
8944
8945
8946
8947
8948
ypd buoyancy
40 hrs No Buoyancy Separation
-2.9
+0.2
-2.6
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.2
-0.5
+0.3
N.D.
+0.1
growth on ypd
YPD
-1.0
-0.1
-0.6
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.3
-0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-1.0
+0.4
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.4
-0.4
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.2
+0.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.2
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
+0.5
+0.3
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.2
-0.1
N.D.
+0.3
auxotrophy
Dropout Complete
-0.4
+0.6
-0.2
N.D.
+0.0
auxotrophy
YNB Glucose
-0.2
+0.5
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.4
-0.3
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.6
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.2
+0.6
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
+0.1
+1.2
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
+0.4
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.2
+1.7
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.4
+0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
+2.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+1.5
N.D.
-0.2
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