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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8947 and 8948 are separated by 201 nucleotides
8948 and 8949 are separated by 430 nucleotides
8949 and 8950 are separated by 116 nucleotides
8950 and 8951 are separated by 100 nucleotides
mRNA_579: 8947 - K10686 UBE1C, UBA3 ubiquitin-activating enzyme E1 C, at 1,386,772 to 1,388,532
8947
mRNA_580: 8948 - Hypothetical Protein, at 1,388,734 to 1,389,540
8948
mRNA_581: 8949 - Interpro ERCC4 domain 0, at 1,389,971 to 1,392,481
8949
mRNA_582: 8950 - K02876 RP-L15, MRPL15, rplO large subunit ribosomal protein L15, at 1,392,598 to 1,393,775
8950
mRNA_583: 8951 - HMMPfam-Protein of Unknown function (DUF1690)-PF07956, at 1,393,876 to 1,394,660
8951
Group
Condition
mRNA
_579
mRNA
_580
mRNA
_581
mRNA
_582
mRNA
_583
8947
8948
8949
8950
8951
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.7
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.3
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-0.5
N.D.
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.3
-0.3
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.7
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
-0.6
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.4
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.3
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.2
N.D.
-0.4
growth on ypd
YPD
N.D.
-0.2
+0.3
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
+0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
+0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.2
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose
N.D.
+0.1
+0.1
N.D.
-0.0
auxotrophy
Dropout Complete
N.D.
+0.0
+0.5
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.4
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
+1.0
N.D.
+0.5
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