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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8949 and 8950 are separated by 116 nucleotides
8950 and 8951 are separated by 100 nucleotides
8951 and 8952 are separated by 145 nucleotides
8952 and 8953 are separated by 314 nucleotides
mRNA_581: 8949 - Interpro ERCC4 domain 0, at 1,389,971 to 1,392,481
8949
mRNA_582: 8950 - K02876 RP-L15, MRPL15, rplO large subunit ribosomal protein L15, at 1,392,598 to 1,393,775
8950
mRNA_583: 8951 - HMMPfam-Protein of Unknown function (DUF1690)-PF07956, at 1,393,876 to 1,394,660
8951
mRNA_584: 8952 - K01259 pip proline iminopeptidase, at 1,394,806 to 1,396,431
8952
mRNA_585: 8953 - HMMPfam-Polynucleotide kinase 3 phosphatase-PF08645,HMMPfam-AAA domain-PF13671,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF56784, at 1,396,746 to 1,398,490
8953
Group
Condition
mRNA
_581
mRNA
_582
mRNA
_583
mRNA
_584
mRNA
_585
8949
8950
8951
8952
8953
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
N.D.
+0.1
-0.4
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
N.D.
-0.1
-0.6
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-0.5
-0.7
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
N.D.
-0.1
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
N.D.
+0.3
+0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-0.4
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.2
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.2
+0.2
-0.5
growth on oleic acid
YNB Glucose
-0.3
N.D.
-0.1
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
-0.1
-0.0
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.1
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.4
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.2
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
-0.1
-0.0
-0.0
auxotrophy
YNB Glucose
+0.1
N.D.
-0.0
+0.1
-0.1
growth on ypd
YPD
+0.3
N.D.
-0.2
+0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.1
+0.0
+0.3
auxotrophy
Dropout Complete
+0.5
N.D.
-0.2
+0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
-0.0
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.4
N.D.
+0.2
+0.5
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
N.D.
+0.5
-0.9
+0.5
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