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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8951 and 8952 are separated by 145 nucleotides
8952 and 8953 are separated by 314 nucleotides
8953 and 8954 are separated by 164 nucleotides
8954 and 8955 are separated by 348 nucleotides
mRNA_583: 8951 - HMMPfam-Protein of Unknown function (DUF1690)-PF07956, at 1,393,876 to 1,394,660
8951
mRNA_584: 8952 - K01259 pip proline iminopeptidase, at 1,394,806 to 1,396,431
8952
mRNA_585: 8953 - HMMPfam-Polynucleotide kinase 3 phosphatase-PF08645,HMMPfam-AAA domain-PF13671,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF56784, at 1,396,746 to 1,398,490
8953
mRNA_586: 8954 - K20291 COG4, COD1 conserved oligomeric Golgi complex subunit 4, at 1,398,655 to 1,401,525
8954
mRNA_587: 8955 - K10846 ERCC5, XPG, RAD2 DNA excision repair protein ERCC-5, at 1,401,874 to 1,405,590
8955
Group
Condition
mRNA
_583
mRNA
_584
mRNA
_585
mRNA
_586
mRNA
_587
8951
8952
8953
8954
8955
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.6
-0.1
N.D.
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.7
+0.2
N.D.
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
-0.3
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.4
-0.5
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.0
-0.1
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.3
-0.1
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
-0.0
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.1
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
-0.3
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
-0.5
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.9
+0.5
N.D.
-0.1
growth on ypd
YPD
-0.2
+0.4
-0.3
N.D.
+0.2
auxotrophy
Dropout Complete
-0.2
+0.0
-0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
-0.5
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.0
N.D.
+0.2
auxotrophy
YNB Glucose
-0.0
+0.1
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.3
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
+0.3
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.5
+0.1
N.D.
-0.0
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