Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
8952 and 8953 are separated by 314 nucleotides
8953 and 8954 are separated by 164 nucleotides
8954 and 8955 are separated by 348 nucleotides
8955 and 8956 are separated by 802 nucleotides
mRNA_584: 8952 - K01259 pip proline iminopeptidase, at 1,394,806 to 1,396,431
8952
mRNA_585: 8953 - HMMPfam-Polynucleotide kinase 3 phosphatase-PF08645,HMMPfam-AAA domain-PF13671,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF56784, at 1,396,746 to 1,398,490
8953
mRNA_586: 8954 - K20291 COG4, COD1 conserved oligomeric Golgi complex subunit 4, at 1,398,655 to 1,401,525
8954
mRNA_587: 8955 - K10846 ERCC5, XPG, RAD2 DNA excision repair protein ERCC-5, at 1,401,874 to 1,405,590
8955
mRNA_588: 8956 - K12609 CAF120 CCR4-NOT transcriptional complex subunit CAF120, at 1,406,393 to 1,408,614
8956
Group
Condition
mRNA
_584
mRNA
_585
mRNA
_586
mRNA
_587
mRNA
_588
8952
8953
8954
8955
8956
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.1
N.D.
-1.5
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.3
N.D.
-1.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+0.2
N.D.
-1.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.5
N.D.
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
N.D.
-0.4
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
N.D.
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
N.D.
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.5
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.5
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.5
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.3
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
N.D.
+0.1
-0.3
growth on oleic acid
YNB Glucose
+0.1
-0.0
N.D.
-0.1
-0.2
auxotrophy
Dropout Complete
+0.0
-0.0
N.D.
+0.2
-0.4
growth on ypd
YPD
+0.4
-0.3
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose
+0.1
-0.1
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
N.D.
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.1
N.D.
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.3
N.D.
+0.2
+0.0
remove
mRNA_584
plot
remove
mRNA_585
plot
remove
mRNA_586
remove
mRNA_587
plot
remove
mRNA_588
plot