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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8953 and 8954 are separated by 164 nucleotides
8954 and 8955 are separated by 348 nucleotides
8955 and 8956 are separated by 802 nucleotides
8956 and 8957 are separated by 4105 nucleotides
mRNA_585: 8953 - HMMPfam-Polynucleotide kinase 3 phosphatase-PF08645,HMMPfam-AAA domain-PF13671,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF56784, at 1,396,746 to 1,398,490
8953
mRNA_586: 8954 - K20291 COG4, COD1 conserved oligomeric Golgi complex subunit 4, at 1,398,655 to 1,401,525
8954
mRNA_587: 8955 - K10846 ERCC5, XPG, RAD2 DNA excision repair protein ERCC-5, at 1,401,874 to 1,405,590
8955
mRNA_588: 8956 - K12609 CAF120 CCR4-NOT transcriptional complex subunit CAF120, at 1,406,393 to 1,408,614
8956
mRNA_589: 8957 - KOG1763 Uncharacterized conserved protein, contains CCCH-type Zn-finger, at 1,412,720 to 1,414,364
8957
Group
Condition
mRNA
_585
mRNA
_586
mRNA
_587
mRNA
_588
mRNA
_589
8953
8954
8955
8956
8957
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-1.5
-0.0
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
-1.1
+0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
-1.1
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.0
N.D.
-0.1
-0.2
-0.7
growth on ypd
YPD
-0.3
N.D.
+0.2
-0.3
-0.6
auxotrophy
Dropout Complete
-0.0
N.D.
+0.2
-0.4
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
-0.4
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
N.D.
-0.4
-0.2
+0.5
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
-0.3
-0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
N.D.
-0.1
-0.1
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.1
-0.3
-0.1
auxotrophy
YNB Glucose
-0.1
N.D.
+0.2
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
N.D.
-0.2
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.1
-0.3
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
+0.2
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.0
-0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-0.1
-0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.2
+0.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
-0.0
-0.1
+0.8
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