Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 8953 and 8954 are separated by 164 nucleotides8954 and 8955 are separated by 348 nucleotides8955 and 8956 are separated by 802 nucleotides8956 and 8957 are separated by 4105 nucleotides mRNA_585: 8953 - HMMPfam-Polynucleotide kinase 3 phosphatase-PF08645,HMMPfam-AAA domain-PF13671,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF56784, at 1,396,746 to 1,398,490 8953 mRNA_586: 8954 - K20291 COG4, COD1 conserved oligomeric Golgi complex subunit 4, at 1,398,655 to 1,401,525 8954 mRNA_587: 8955 - K10846 ERCC5, XPG, RAD2 DNA excision repair protein ERCC-5, at 1,401,874 to 1,405,590 8955 mRNA_588: 8956 - K12609 CAF120 CCR4-NOT transcriptional complex subunit CAF120, at 1,406,393 to 1,408,614 8956 mRNA_589: 8957 - KOG1763 Uncharacterized conserved protein, contains CCCH-type Zn-finger, at 1,412,720 to 1,414,364 8957
Group Condition mRNA_585 mRNA_586 mRNA_587 mRNA_588 mRNA_589
8953 8954 8955 8956 8957
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 N.D. -1.5 -0.0 -0.5
facs on lipid accumulation Sorted High BODIPY Gate +0.2 N.D. -1.1 +0.0 -0.4
facs on lipid accumulation Sorted No BODIPY Gate -0.3 N.D. -1.1 +0.1 +0.2
growth on oleic acid YNB Glucose -0.0 N.D. -0.1 -0.2 -0.7
growth on ypd YPD -0.3 N.D. +0.2 -0.3 -0.6
auxotrophy Dropout Complete -0.0 N.D. +0.2 -0.4 -0.7
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 N.D. -0.4 -0.3 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.5 N.D. -0.4 -0.2 +0.5
growth on oleic acid YNB Oleic Acid -0.0 N.D. -0.3 -0.2 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.5 N.D. -0.1 -0.1 -0.7
auxotrophy YNB Glucose 75mM Arginine -0.1 N.D. +0.1 -0.3 -0.1
auxotrophy YNB Glucose -0.1 N.D. +0.2 -0.2 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.5 N.D. -0.2 -0.1 +0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 N.D. +0.1 -0.3 +0.4
ypd buoyancy 40 hrs Low Buoyancy -0.0 N.D. +0.2 +0.1 -0.4
auxotrophy YNB Glucose 75mM Methionine +0.1 N.D. -0.0 -0.2 -0.0
growth on ricinoleic acid YNB Glucose -0.1 N.D. +0.0 -0.3 +0.3
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 N.D. -0.1 -0.3 +0.4
ypd buoyancy 40 hrs High Buoyancy +0.3 N.D. +0.2 +0.0 -0.3
ypd buoyancy 40 hrs Median Buoyancy +0.0 N.D. +0.1 +0.2 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 N.D. -0.0 -0.1 +0.8
remove
mRNA_585
plot
remove
mRNA_586
plot
remove
mRNA_587
remove
mRNA_588
plot
remove
mRNA_589
plot