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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8956 and 8957 are separated by 4105 nucleotides
8957 and 8958 are separated by 274 nucleotides
8958 and 8959 are separated by 114 nucleotides
8959 and 8960 are separated by 126 nucleotides
mRNA_588: 8956 - K12609 CAF120 CCR4-NOT transcriptional complex subunit CAF120, at 1,406,393 to 1,408,614
8956
mRNA_589: 8957 - KOG1763 Uncharacterized conserved protein, contains CCCH-type Zn-finger, at 1,412,720 to 1,414,364
8957
mRNA_590: 8958 - K05543 DUS2 tRNA-dihydrouridine synthase 2, at 1,414,639 to 1,416,336
8958
mRNA_591: 8959 - K01915 glnA, GLUL glutamine synthetase, at 1,416,451 to 1,418,413
8959
mRNA_592: 8960 - K10747 LIG1 DNA ligase 1, at 1,418,540 to 1,422,145
8960
Group
Condition
mRNA
_588
mRNA
_589
mRNA
_590
mRNA
_591
mRNA
_592
8956
8957
8958
8959
8960
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.7
N.D.
-0.5
-0.7
auxotrophy
Dropout Complete
-0.4
-0.7
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.4
N.D.
-0.6
-0.3
growth on ypd
YPD
-0.3
-0.6
N.D.
+0.1
-0.2
growth on oleic acid
YNB Glucose
-0.2
-0.7
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose
-0.2
-0.2
N.D.
-0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.3
N.D.
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
N.D.
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
N.D.
-0.5
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.5
N.D.
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
N.D.
-0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.4
N.D.
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.0
N.D.
-0.5
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.4
N.D.
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.4
N.D.
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.3
+0.3
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
N.D.
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.5
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.8
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
N.D.
+0.4
+0.0
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